Resources


Model Credentialed Federated

EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain

Source: Physionet

Transformer-based neural language models have led to breakthroughs for a variety of natural language processing (NLP) tasks. However, most models are pretrained on general domain data. We propose a methodology to produce a model focused on the clini…

Published: Sept. 9, 2021. Version: 1.0.0 | DOI: 10.13026/kwdm-6a56


Software Open Federated

Model for Simulating ECG and PPG Signals with Arrhythmia Episodes

Source: Physionet

The simulation of electrocardiographic (ECG) and photoplethysmographic (PPG) signals with cardiac arrhythmias is important when developing and testing arrhythmia detectors. This software is capable of simulating sinus rhythm, episodes of atrial…

atrial fibrillation motion artifacts noise arrhythmia bradycardia tachycardia simulation ecg ppg detection

Published: Aug. 31, 2021. Version: 1.3.0 | DOI: 10.13026/c5qq-2g72


Database Open Federated

RR interval time series from healthy subjects

Source: Physionet

Heart rate variability (HRV) is mainly controlled by the autonomic nervous system (ANS) interacting with receptors on the sinoatrial node (SAN). HRV is influenced by many several factors such as chemical, hormonal and neural modulations, circadian c…

rr time series healthy subjects heart rate variability from newly born to adult

Published: Aug. 30, 2021. Version: 1.0.0 | DOI: 10.13026/51yd-d219


Software Open Federated

Lightweight 12-lead ECG viewer for MATLAB

Source: Physionet

Electrocardiograms (ECGs) provide time-varying measurements of the electrical activity of the heart. These signals can provide insights into underlying aspects of heart health and disease. Here we provide software for viewing 12-lead ECG files (in .…

routine clinical ecg electrocardiogram viewer clinical 12-lead ecg

Published: Aug. 30, 2021. Version: 1.0.0 | DOI: 10.13026/sm8m-v308


Database Open Federated

NCH Sleep DataBank: A Large Collection of Real-world Pediatric Sleep Studies with Longitudinal Clinical Data

Source: Physionet

In order to accelerate research on pediatric sleep and its connection to health, Nationwide Children's Hospital (NCH) and Carnegie Mellon University (CMU) introduce the NCH Sleep DataBank. This dataset has 3,984 pediatric sleep studies on 3,673 …

ehr eeg ecg clinical decision support pediatrics sleep disorders sleep study electronic health records polysomnography

Published: Aug. 28, 2021. Version: 1.0.0 | DOI: 10.13026/fp4y-6m41


Database Credentialed Federated

Electrodermal Activity of Healthy Volunteers while Awake and at Rest

Source: Physionet

This dataset of electrodermal activity was collected from 11 healthy volunteer subjects who were awake and at rest in seated position. The activity was recorded from each subject's non-dominant hand for one hour at 256 Hz. Electrodermal act…

sweat gland activity autonomic nervous system anesthesia sympathetic nervous system electrodermal activity propofol

Published: Aug. 26, 2021. Version: 2.0 | DOI: 10.13026/136t-7g98


Database Restricted Federated

VinDr-SpineXR: A large annotated medical image dataset for spinal lesions detection and classification from radiographs

Source: Physionet

Radiographs are used as the most critical imaging tool for identifying spine anomalies in clinical practice [1]. The evaluation of spinal bone lesions, however, is a challenging task for radiologists. To the best of our knowledge, no existing studie…

Published: Aug. 24, 2021. Version: 1.0.0 | DOI: 10.13026/q45h-5h59


Database Restricted Federated

Upper body thermal images and associated clinical data from a pilot cohort study of COVID-19

Source: Physionet

The prospective upper body thermal images SARS-CoV2 association study was designed to test the hypothesis that thermal videos may aid in the early diagnosis of COVID-19. The study recorded a set of measurements from 252 participants regarding PCR re…

covid-19 thermal videos sars-cov-2 clinical symptoms

Published: Aug. 16, 2021. Version: 1.1 | DOI: 10.13026/wfr2-5973


Database Open Federated

Autonomic Aging: A dataset to quantify changes of cardiovascular autonomic function during healthy aging

Source: Physionet

Autonomic function regulating blood pressure and cardiac rhythm progressively declines with increasing age. Impaired cardiovascular control promotes a variety of age-related conditions such as dementia, or Alzheimer’s disease. This study aims …

blood pressure age cardiovascular baroreflex heart rate variability

Published: July 30, 2021. Version: 1.0.0 | DOI: 10.13026/2hsy-t491


Database Open Federated

Behavioral and autonomic dynamics during propofol-induced unconsciousness

Source: Physionet

During general anesthesia, both behavioral and autonomic changes are caused by the administration of anesthetics such as propofol. Propofol produces unconsciousness by creating highly structured oscillations in brain circuits. The anesthetic also ha…

anesthesia autonomic nervous system propofol heart rate variability electrodermal activity

Published: July 30, 2021. Version: 1.0 | DOI: 10.13026/2rbc-1r03