Resources
Database Open Federated
Labeled raw accelerometry data captured during walking, stair climbing and driving
The database contains raw accelerometry data collected during outdoor walking, stair climbing, and driving for 32 healthy adults. Accelerometry data were collected simultaneously at four body locations: left wrist, left hip, left ankle, and right an…
actigraph accelerometers walking activity physical activity activity monitor accelerometer driving activity raw accelerometry data accelerometry activity meter activity recognition
Published: June 26, 2021. Version: 1.0.0 | DOI: 10.13026/51h0-a262
Database Credentialed Federated
VinDr-CXR: An open dataset of chest X-rays with radiologist annotations
We describe here a dataset of more than 100,000 chest X-ray scans that were retrospectively collected from two major hospitals in Vietnam. Out of this raw data, we release 18,000 images that were manually annotated by a total of 17 experienced radio…
lesion detection disease classification computer vision chest x-ray interpretation deep learning
Published: June 22, 2021. Version: 1.0.0 | DOI: 10.13026/3akn-b287
Database Open Federated
MIMIC-IV demo data in the OMOP Common Data Model
In this project, the MIMIC-IV demo database was used to create an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) instance. The transformation was built making use of template scripts and concept mappings from a previous pr…
omop common data model
Published: June 22, 2021. Version: 0.9 | DOI: 10.13026/p1f5-7x35
Database Restricted Federated
Upper body thermal images and associated clinical data from a pilot cohort study of COVID-19
The prospective upper body thermal images SARS-CoV2 association study was designed to test the hypothesis that thermal videos may aid in the early diagnosis of COVID-19. The study recorded a set of measurements from 252 participants regarding PCR re…
thermal videos covid-19 sars-cov-2 clinical symptoms
Published: June 21, 2021. Version: 1.0 | DOI: 10.13026/pgk4-gx55
Database Credentialed Federated
CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes
We created a dataset of clinical action items annotated over MIMIC-III. This dataset, which we call CLIP, is annotated by physicians and covers 718 discharge summaries, representing 107,494 sentences. Annotations were collected as character-level sp…
Published: June 21, 2021. Version: 1.0.0 | DOI: 10.13026/kw00-z903
Database Open Federated
EPHNOGRAM: A Simultaneous Electrocardiogram and Phonocardiogram Database
The electro-phono-cardiogram (EPHNOGRAM) project focused on the development of low-cost and low-power devices for recording simultaneous electrocardiogram (ECG) and phonocardiogram (ECG) data, with auxiliary channels for capturing environmental audi…
stress-test electrocardiogram phonocardiogram
Published: June 12, 2021. Version: 1.0.0 | DOI: 10.13026/tjtq-5911
Database Open Federated
Q-Pain: A Question Answering Dataset to Measure Social Bias in Pain Management
We introduce Q-Pain, a dataset for assessing bias in medical QA in the context of pain management. We developed 55 medical question-answer pairs across five different types of pain management: each question includes a detailed patient-specific medic…
Published: June 11, 2021. Version: 1.0.0 | DOI: 10.13026/2tdv-hj07
Database Credentialed Federated
RadGraph: Extracting Clinical Entities and Relations from Radiology Reports
RadGraph is a dataset of entities and relations in full-text radiology reports. We designed a novel information extraction (IE) schema to structure clinical information in a radiology report with four entities and three relations. Our train set cons…
entity and relation extraction natural language processing graph radiology multi-modal
Published: June 3, 2021. Version: 1.0.0 | DOI: 10.13026/hm87-5p47
Database Credentialed Federated
MIMIC-IV-ED
MIMIC-ED is a large, freely available database of emergency department (ED) admissions at the Beth Israel Deaconess Medical Center between 2011 and 2019. As of MIMIC-ED v1.0, the database contains 448,972 ED stays. Vital signs, triage information, m…
ed emergency mimic mimic-iv
Published: June 3, 2021. Version: 1.0 | DOI: 10.13026/77z6-9w59
Database Open Federated
Open Access Dataset and Toolbox of High-Density Surface Electromyogram Recordings
We provide an open access dataset of High densitY Surface Electromyogram (HD-sEMG) Recordings (named "Hyser"), and a toolbox for neural interface research. We acquired data from 20 subjects with each subject participating in our experiment…
Published: May 28, 2021. Version: 1.0.0 | DOI: 10.13026/ym7v-bh53