Resources
Database Open Federated
Respiratory dataset from PEEP study with expiratory occlusion
A trial was conducted to collect gauge pressure and flow from a venturi-based flow-meter, dynamic abdominal and thoracic circumference from rotary-encoder based tape measures, and aeration data from electrical impedance tomography (EIT). Data was co…
Published: Nov. 10, 2023. Version: 1.0.0 | DOI: 10.13026/d767-e709
Database Credentialed Federated
BOLD, a blood-gas and oximetry linked dataset
Pulse oximeters measure peripheral arterial oxygen saturation (SpO2) noninvasively, while the gold standard involves arterial blood gas measurement (SaO2). There are known racial and ethnic disparities in their performance. BOLD is a new comprehensi…
health equity electronic health records pulse oximetry intensive care unit
Published: Nov. 9, 2023. Version: 1.0 | DOI: 10.13026/phvt-3277
Model Credentialed Federated
Characterization of Stigmatizing Language in Medical Records
Widespread disparities in clinical outcomes exist between different demographic groups in the United States. A new line of work in medical sociology has demonstrated physicians often use stigmatizing language in electronic medical records within cer…
clinical natural language processing domain transfer bias stigmatizing language mimic large language models
Published: Nov. 6, 2023. Version: 1.0.0 | DOI: 10.13026/53xq-jz70
Database Credentialed Federated
INSPIRE, a publicly available research dataset for perioperative medicine
We present the INSPIRE dataset, a publicly available research dataset in perioperative medicine, which includes approximately 130,000 cases (50% of all surgical cases) who underwent anesthesia for surgery at an academic institution in South Korea be…
perioperative medicine multi-center open dataset surgery
Published: Nov. 3, 2023. Version: 1.1 | DOI: 10.13026/gjyw-ea42
Software Open Federated
Transformer-DeID: Deidentification of free-text clinical notes with transformers
Sharing patient data such as clinical notes among clinicians and researchers is fundamental to advancements in clinical practice and biomedical research. Prior to distribution, it is often necessary and legally mandated to remove identifiers such as…
neural networks transformers deidentification
Published: Nov. 2, 2023. Version: 1.0.0 | DOI: 10.13026/7dj5-7x85
Database Credentialed Federated
CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports
Surveillance of invasive fungal infection (IFI) in clinical settings is a laborious process requiring a detailed review of patient medical history. One of the key sources of clinical information is cytology and histopathology reports: pathologist-pr…
clinical documentation information extraction nlp invasive fungal infections
Published: Nov. 2, 2023. Version: 1.0.1 | DOI: 10.13026/ssk0-1x59
Database Contributor Review Federated
CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools
The CARMEN-I corpus comprises 2,000 clinical records, encompassing discharge letters, referrals, and radiology reports from Hospital Clínic of Barcelona between March 2020 and March 2022. These reports, primarily in Spanish with some Catalan …
de-identification anonymization clinical ner
Published: Nov. 2, 2023. Version: 1.0 | DOI: 10.13026/bxrx-y344
Database Open Federated
Induced Cesarean EHG DataSet (ICEHG DS): An open dataset with electrohysterogram records of pregnancies ending in induced and cesarean section delivery
The surface electrohysterogram (EHG) has emerged as a promising diagnostic tool for non-invasive automated preterm birth prediction. The existing automated preterm birth prediction methods rely on the use of uterine EHG records coming from spontaneo…
cesarean-section delivery neuroelectric induced delivery pregnancy electrohysterogram
Published: Oct. 8, 2023. Version: 1.0.1 | DOI: 10.13026/zw34-n382
Database Credentialed Federated
INSPIRE, a publicly available research dataset for perioperative medicine
We present the INSPIRE dataset, a publicly available research dataset in perioperative medicine, which includes approximately 130,000 cases (50% of all surgical cases) who underwent anesthesia for surgery at an academic institution in South Korea be…
perioperative medicine multi-center open dataset surgery
Published: Oct. 6, 2023. Version: 1.0 | DOI: 10.13026/jyzb-ez61
Challenge Open Federated
Heart Murmur Detection from Phonocardiogram Recordings: The George B. Moody PhysioNet Challenge 2022
Congenital heart diseases affect about 1% of newborns, representing an important morbidity and mortality factor for several severe conditions, including advanced heart failure [1]. In a 2019 survey, it was estimated that congenital heart diseases af…
challenge competition cardiac auscultation congenital heart diseases
Published: Sept. 28, 2023. Version: 1.0.0 | DOI: 10.13026/t49p-5v35