Resources


Database Credentialed Federated

MIMIC-Ext-CXR-QBA: A Structured, Tagged, and Localized Visual Question Answering Dataset with Question-Box-Answer Triplets and Scene Graphs for Chest X-ray Images

Source: Physionet

Visual Question Answering (VQA) enables flexible and context-dependent analysis of medical images, such as chest X-rays (CXRs), by allowing users to pose specific questions and receive nuanced answers. However, existing CXR VQA datasets are typicall…

localization chest x-rays scene graphs vqa

Published: July 23, 2025. Version: 1.0.0 | DOI: 10.13026/8qmz-da41


Challenge Credentialed Federated

SNOMED CT Entity Linking Challenge

Source: Physionet

This challenge, sponsored by SNOMED International, seeks to advance the development of Entity Linking models that operate on unstructured clinical texts. Participants in the challenge will train entity linking models using a subset of MIMIC-IV-Note …

entity linking clinical annotation snomed

Published: July 22, 2025. Version: 1.1.0 | DOI: 10.13026/qn8t-6e19


Database Open Federated

Wearable Device Dataset from Induced Stress and Structured Exercise Sessions

Source: Physionet

This original dataset contains physiological signals collected during structured acute stress induction and aerobic and anaerobic exercise sessions using a wearable device. Blood volume pulse, motion-based activity, skin temperature, and electroderm…

exercise wearable aerobic stress anaerobic

Published: June 24, 2025. Version: 1.0.1 | DOI: 10.13026/he0v-tf17


Database Restricted Federated

Swiss-Mammo: A physician-written, synthetic dataset of German mammography reports

Source: Physionet

This dataset, Swiss-Mammo, contains 28 manually constructed German mammography reports, each paired with an English translation. The reports are stratified across BI-RADS categories 0 through 6, with four reports per category. All reports were manua…

mammography structured reporting radiology bi-rads

Published: June 24, 2025. Version: 1.0.1 | DOI: 10.13026/95cy-rc09


Database Restricted Federated

Microbiological, Immunological and Biochemical Characteristics of the Development of Ventilator Associated Pneumonia

Source: Physionet

The respiratory microbiome plays a critical role in metabolism, immune system maturation, and protection against pathogens. Traditionally, respiratory microbiology in pneumonia focused on identifying a specific pathogen, often disregarding normal or…

Published: June 24, 2025. Version: 1.1.0 | DOI: 10.13026/aeqv-0v88


Database Open Federated

tOLIet: Single-lead Thigh-based Electrocardiography Using Polimeric Dry Electrodes

Source: Physionet

Our team previously introduced an innovative concept for an "invisible" Electrocardiography (ECG) system, incorporating electrodes and sensors into a toilet seat design to enable signal acquisition from the thighs. Building upon that work, we now pr…

Published: June 24, 2025. Version: 1.0.0 | DOI: 10.13026/v66k-sk82


Database Restricted Federated

Community-Acquired Pneumonia, Endotypes and Phenotypes (NACef): Prospective, observational cohort study of Translational Medicine

Source: Physionet

Community-Acquired Pneumonia (CAP) remains a prominent infectious process associated with elevated in-hospital morbidity and mortality rates. Through the exploration of phenotypes, endotypes, and biomarkers, it becomes feasible to identify individua…

Published: June 9, 2025. Version: 2.0.0 | DOI: 10.13026/84f3-sa05


Database Open Federated

Hillel Yaffe Glaucoma Dataset (HYGD): A Gold-Standard Annotated Fundus Dataset for Glaucoma Detection

Source: Physionet

Glaucomatous optic neuropathy (GON) is a leading cause of irreversible blindness worldwide, affecting an estimated 64.3 million people globally with projections reaching 111.8 million by 2040. Approximately 50% of cases remain undiagnosed until adva…

gon ophthalmology dfi gold-standard fundus retina glaucoma

Published: June 3, 2025. Version: 1.0.0 | DOI: 10.13026/z0ak-km33


Database Open Federated

bigP3BCI: An Open, Diverse and Machine Learning Ready P300-based Brain-Computer Interface Dataset

Source: Physionet

Brain–computer interfaces (BCIs) have wide-ranging applications as solutions for replacing or substituting neural output that has been lost because of severe neuromuscular injury or disease, such as individuals with late-stage amyotrophic late…

ieee p2731 working group standard amyotrophic lateral sclerosis p300 speller p300 event related potential oddball paradigm error-related potential electroencephalography brain-computer interface

Published: May 19, 2025. Version: 1.0.0 | DOI: 10.13026/0byy-ry86


Database Credentialed Federated

MIMIC-IV-Ext Cardiac Disease

Source: Physionet

With the rapid development of generative LLMs (large language models) in the field of natural language processing, their potential in medical applications has become increasingly evident. However, most existing studies rely on exam-style questions o…

Published: May 6, 2025. Version: 1.0.0 | DOI: 10.13026/khgm-hc33